Java for Bioinformatics

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Tutorial: Java for Bioinformatics

Bioinformatics challenges developers to create widely distributable tools that elucidate biological relationships. The principal value of these tools is measured in the contribution they provide to research biologists. Furthermore, as the amount and natur

Tutorial Details:

The Bioinformatics Challenge
The creation of many new bioinformatic applications is largely a response to the biological community aggregating types of knowledge and developing new experimental techniques. The development of bioinformatic applications can be broken down into two main tasks: data management and biological analysis. The first task generally involves aggregating sequences (strings representing DNA or proteins, the former being represented by non-random but complex patterns of As, Cs, Ts and Gs) and/or annotation information

Genome browsers, like EnsEMBL and UCSC, actively aggregate and serve the known properties of a given sequence; for instance, annotation consists of the locations of genes and other biologically relevant features).
annotation for several genomes (the chemical sequences that make up an organism\'s DNA). Bioinformaticians wishing to exploit new data constantly need to know what data exists, how they can access this data, and when to provide it to their users.

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